HL_6GSM_024
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- GAGGUGAAAUUC
- Length
- 12 nucleotides
- Bulged bases
- 6GSM|1|2|G|903
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSM|1|2|G|898
6GSM|1|2|A|899
6GSM|1|2|G|900
6GSM|1|2|G|901
6GSM|1|2|U|902
6GSM|1|2|G|903
6GSM|1|2|A|904
6GSM|1|2|A|905
6GSM|1|2|A|906
6GSM|1|2|U|907
6GSM|1|2|U|908
6GSM|1|2|C|909
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S1
- Chain F
- KLLA0D10659p
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: