HL_6GSM_027

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UUUUUCUUAUGA

Length

12 nucleotides

Bulged bases

6GSM|1|2|U|1057

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|U|1053
6GSM|1|2|U|1054
6GSM|1|2|U|1055
6GSM|1|2|U|1056
6GSM|1|2|U|1057
6GSM|1|2|C|1058
6GSM|1|2|U|1059
6GSM|1|2|U|1060
6GSM|1|2|A|1061
6GSM|1|2|U|1062
6GSM|1|2|G|1063
6GSM|1|2|A|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1

Chain R

KLLA0B01474p

Chain b

40S ribosomal protein S27

Chain o

Eukaryotic translation initiation factor 3 subunit A,eIF3a

Chain q

Eukaryotic translation initiation factor 3 subunit C