HL_6GSM_029

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_029 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.3474

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GSM|1|2|C|1120
6GSM|1|2|G|1121
6GSM|1|2|C|1122
6GSM|1|2|A|1123
6GSM|1|2|A|1124
6GSM|1|2|G|1125

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

eL41

Chain q

Eukaryotic translation initiation factor 3 subunit C