HL_6GSM_035

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGUUUCAAGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|G|1392
6GSM|1|2|G|1393
6GSM|1|2|U|1394
6GSM|1|2|U|1395
6GSM|1|2|U|1396
6GSM|1|2|C|1397
6GSM|1|2|A|1398
6GSM|1|2|A|1399
6GSM|1|2|G|1400
6GSM|1|2|C|1401
6GSM|1|2|C|1402

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain R

KLLA0B01474p

Chain c

40S ribosomal protein S28

Chain g

KLLA0E12277p