HL_6GSM_042

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6GSM|1|2|U|158

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_042 not in the Motif Atlas

Homologous match to HL_8CRE_193

Geometric discrepancy: 0.4265

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6GSM|1|2|G|153
6GSM|1|2|U|154
6GSM|1|2|A|155
6GSM|1|2|A|156
6GSM|1|2|U|157
6GSM|1|2|U|158
6GSM|1|2|C|159

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24