HL_6GSM_045

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6GSM|1|2|G|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_045 not in the Motif Atlas

Homologous match to HL_8CRE_207

Geometric discrepancy: 0.2715

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6GSM|1|2|U|764
6GSM|1|2|G|765
6GSM|1|2|U|766
6GSM|1|2|U|767
6GSM|1|2|C|768
6GSM|1|2|A|769
6GSM|1|2|A|770
6GSM|1|2|A|771
6GSM|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24