HL_6GSN_001

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CAGUGGAAG

Length

9 nucleotides

Bulged bases

6GSN|1|1|G|18, 6GSN|1|1|G|19, 6GSN|1|1|A|20, 6GSN|1|1|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_001 not in the Motif Atlas

Homologous match to HL_5UD5_001

Geometric discrepancy: 0.3542

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6GSN|1|1|C|13
6GSN|1|1|A|14
6GSN|1|1|G|15
6GSN|1|1|U|16
6GSN|1|1|G|18
6GSN|1|1|G|19
6GSN|1|1|A|20
6GSN|1|1|A|21
6GSN|1|1|G|22

Current chains

Chain 1

tRNAi (75-MER)

Nearby chains

Chain j

Eukaryotic translation initiation factor 2 subunit alpha

Chain m

Eukaryotic translation initiation factor eIF-1