HL_6GSN_002
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UCUCAUAAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSN_002 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.2061
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6GSN|1|1|U|31
6GSN|1|1|C|32
6GSN|1|1|U|33
6GSN|1|1|C|34
6GSN|1|1|A|35
6GSN|1|1|U|36
6GSN|1|1|A|37
6GSN|1|1|A|38
6GSN|1|1|A|39
Current chains
- Chain 1
- tRNAi (75-MER)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA
- Chain Q
- 40S ribosomal protein S16
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor eIF-1
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