HL_6GSN_003
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- 6GSN|1|1|A|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSN_003 not in the Motif Atlas
- Homologous match to HL_3TUP_003
- Geometric discrepancy: 0.2679
- The information below is about HL_3TUP_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6GSN|1|1|G|53
6GSN|1|1|A|54
6GSN|1|1|U|55
6GSN|1|1|C|56
6GSN|1|1|G|57
6GSN|1|1|A|58
6GSN|1|1|A|59
6GSN|1|1|A|60
6GSN|1|1|C|61
Current chains
- Chain 1
- tRNAi (75-MER)
Nearby chains
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
Coloring options: