HL_6GSN_006

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGUAAUUCU

Length

9 nucleotides

Bulged bases

6GSN|1|2|U|158

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_006 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.362

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GSN|1|2|G|152
6GSN|1|2|G|153
6GSN|1|2|U|154
6GSN|1|2|A|155
6GSN|1|2|A|156
6GSN|1|2|U|157
6GSN|1|2|U|158
6GSN|1|2|C|159
6GSN|1|2|U|160

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24