HL_6GSN_007

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6GSN|1|2|U|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_007 not in the Motif Atlas

Homologous match to HL_4V88_189

Geometric discrepancy: 0.5858

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6GSN|1|2|C|189
6GSN|1|2|C|190
6GSN|1|2|U|191
6GSN|1|2|U|192
6GSN|1|2|U|193
6GSN|1|2|G|194

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain I

40S ribosomal protein S8