HL_6GSN_014

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6GSN|1|2|A|415

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_014 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2917

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6GSN|1|2|C|413
6GSN|1|2|C|414
6GSN|1|2|A|415
6GSN|1|2|A|416
6GSN|1|2|G|417
6GSN|1|2|G|418

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain G

40S ribosomal protein S6

Chain o

Eukaryotic translation initiation factor 3 subunit A,eIF3a

Chain p

Eukaryotic translation initiation factor 3 subunit B