HL_6GSN_017

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_017 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.2034

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6GSN|1|2|A|519
6GSN|1|2|A|520
6GSN|1|2|U|521
6GSN|1|2|G|522
6GSN|1|2|U|523
6GSN|1|2|A|524
6GSN|1|2|A|525
6GSN|1|2|A|526
6GSN|1|2|U|527
6GSN|1|2|A|528
6GSN|1|2|C|529
6GSN|1|2|C|530
6GSN|1|2|U|531

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24