HL_6GSN_029

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_029 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1574

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GSN|1|2|C|1120
6GSN|1|2|G|1121
6GSN|1|2|C|1122
6GSN|1|2|A|1123
6GSN|1|2|A|1124
6GSN|1|2|G|1125

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain h

60S ribosomal protein L41-A

Chain q

Eukaryotic translation initiation factor 3 subunit C