HL_6GSN_035

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

6GSN|1|2|U|1396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_035 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4082

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6GSN|1|2|U|1394
6GSN|1|2|U|1395
6GSN|1|2|U|1396
6GSN|1|2|C|1397
6GSN|1|2|A|1398
6GSN|1|2|A|1399
6GSN|1|2|G|1400

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain R

KLLA0B01474p