HL_6GSN_037

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CAUUGUAAUUAUUG

Length

14 nucleotides

Bulged bases

6GSN|1|2|A|1557

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|C|1547
6GSN|1|2|A|1548
6GSN|1|2|U|1549
6GSN|1|2|U|1550
6GSN|1|2|G|1551
6GSN|1|2|U|1552
6GSN|1|2|A|1553
6GSN|1|2|A|1554
6GSN|1|2|U|1555
6GSN|1|2|U|1556
6GSN|1|2|A|1557
6GSN|1|2|U|1558
6GSN|1|2|U|1559
6GSN|1|2|G|1560

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain P

KLLA0F07843p

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p

Chain d

40S ribosomal protein S29