HL_6GSN_038
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 6GSN|1|2|G|1599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSN_038 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.248
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GSN|1|2|G|1592
6GSN|1|2|U|1593
6GSN|1|2|C|1594
6GSN|1|2|A|1595
6GSN|1|2|U|1596
6GSN|1|2|C|1597
6GSN|1|2|A|1598
6GSN|1|2|G|1599
6GSN|1|2|C|1600
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain D
- KLLA0D08305p
- Chain Q
- 40S ribosomal protein S16
- Chain T
- KLLA0A07194p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
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