HL_6GSN_039

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

6GSN|1|2|G|1696, 6GSN|1|2|G|1697, 6GSN|1|2|C|1698, 6GSN|1|2|A|1699, 6GSN|1|2|A|1700, 6GSN|1|2|C|1701, 6GSN|1|2|U|1702, 6GSN|1|2|C|1703, 6GSN|1|2|C|1704, 6GSN|1|2|A|1705, 6GSN|1|2|U|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|G|1688
6GSN|1|2|A|1689
6GSN|1|2|G|1690
6GSN|1|2|A|1691
6GSN|1|2|U|1706
6GSN|1|2|C|1707
6GSN|1|2|U|1708
6GSN|1|2|C|1709
6GSN|1|2|G|1696
6GSN|1|2|G|1697
6GSN|1|2|C|1698
6GSN|1|2|A|1699
6GSN|1|2|A|1700
6GSN|1|2|C|1701
6GSN|1|2|U|1702
6GSN|1|2|C|1703
6GSN|1|2|C|1704
6GSN|1|2|A|1705
6GSN|1|2|U|1706
6GSN|1|2|C|1707
6GSN|1|2|U|1708
*
6GSN|1|2|C|1709

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain G

40S ribosomal protein S6