HL_6GWT_035

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6GWT|1|A|A|1453, 6GWT|1|A|C|1454, 6GWT|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GWT_035 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2977

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6GWT|1|A|G|1450
6GWT|1|A|C|1451
6GWT|1|A|G|1452
6GWT|1|A|A|1453
6GWT|1|A|C|1454
6GWT|1|A|G|1455
6GWT|1|A|G|1456
6GWT|1|A|U|1457
6GWT|1|A|U|1458
6GWT|1|A|G|1459
6GWT|1|A|U|1460
6GWT|1|A|C|1461

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17