HL_6GWT_112

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GWT_112 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2285

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GWT|1|a|G|378
6GWT|1|a|C|379
6GWT|1|a|G|380
6GWT|1|a|C|381
6GWT|1|a|A|382
6GWT|1|a|A|383
6GWT|1|a|G|384
6GWT|1|a|C|385

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16