3D structure

PDB id
6GXO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
6GXO|1|A|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GXO_006 not in the Motif Atlas
Homologous match to HL_7RQB_006
Geometric discrepancy: 0.1514
The information below is about HL_7RQB_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06192.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
14

Unit IDs

6GXO|1|A|G|194
6GXO|1|A|A|195
6GXO|1|A|A|196
6GXO|1|A|A|197
6GXO|1|A|C|198
6GXO|1|A|A|199
6GXO|1|A|U|200
6GXO|1|A|C|201

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15
Chain X
50S ribosomal protein L28
Chain x
Transfer RNA; tRNA

Coloring options:


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