HL_6GXO_040

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

6GXO|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_040 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3123

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6GXO|1|A|U|1629
6GXO|1|A|A|1630
6GXO|1|A|G|1631
6GXO|1|A|A|1632
6GXO|1|A|G|1633
6GXO|1|A|A|1634
6GXO|1|A|A|1635
6GXO|1|A|U|1636
6GXO|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains