HL_6GXO_042

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6GXO|1|A|U|1729, 6GXO|1|A|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_042 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.2626

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GXO|1|A|C|1727
6GXO|1|A|C|1728
6GXO|1|A|U|1729
6GXO|1|A|C|1730
6GXO|1|A|G|1731
6GXO|1|A|C|1732
6GXO|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains