HL_6GXO_078

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6GXO|1|a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_078 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2774

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXO|1|a|A|320
6GXO|1|a|A|321
6GXO|1|a|C|322
6GXO|1|a|U|323
6GXO|1|a|G|324
6GXO|1|a|A|325
6GXO|1|a|G|326
6GXO|1|a|A|327
6GXO|1|a|C|328
6GXO|1|a|A|329
6GXO|1|a|C|330
6GXO|1|a|G|331
6GXO|1|a|G|332
6GXO|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20