HL_6GXO_096

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

6GXO|1|a|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXO_096 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2193

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GXO|1|a|G|1133
6GXO|1|a|G|1134
6GXO|1|a|U|1135
6GXO|1|a|C|1136
6GXO|1|a|C|1137
6GXO|1|a|G|1138
6GXO|1|a|G|1139
6GXO|1|a|C|1140
6GXO|1|a|C|1141

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9