HL_6GXO_115
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCCUUGAGG
- Length
- 9 nucleotides
- Bulged bases
- 6GXO|1|a|C|841, 6GXO|1|a|U|842, 6GXO|1|a|U|843, 6GXO|1|a|G|844, 6GXO|1|a|A|845
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GXO_115 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2986
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GXO|1|a|C|839
6GXO|1|a|C|840
6GXO|1|a|C|841
6GXO|1|a|U|842
6GXO|1|a|U|843
6GXO|1|a|G|844
6GXO|1|a|A|845
6GXO|1|a|G|846
6GXO|1|a|G|847
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain r
- 30S ribosomal protein S18
Coloring options: