3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GXP_030 not in the Motif Atlas
Homologous match to HL_7A0S_031
Geometric discrepancy: 0.3532
The information below is about HL_7A0S_031
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

6GXP|1|A|U|1222
6GXP|1|A|G|1223
6GXP|1|A|U|1224
6GXP|1|A|G|1225
6GXP|1|A|A|1226
6GXP|1|A|G|1227

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1484 s
Application loaded.