HL_6GXP_034

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GXP|1|A|U|1396, 6GXP|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1613

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GXP|1|A|G|1389
6GXP|1|A|U|1390
6GXP|1|A|U|1391
6GXP|1|A|A|1392
6GXP|1|A|A|1393
6GXP|1|A|U|1394
6GXP|1|A|A|1395
6GXP|1|A|U|1396
6GXP|1|A|U|1397
6GXP|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23