HL_6GXP_035

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6GXP|1|A|A|1453, 6GXP|1|A|C|1454, 6GXP|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3528

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GXP|1|A|G|1450
6GXP|1|A|C|1451
6GXP|1|A|G|1452
6GXP|1|A|A|1453
6GXP|1|A|C|1454
6GXP|1|A|G|1455
6GXP|1|A|G|1456
6GXP|1|A|U|1457
6GXP|1|A|U|1458
6GXP|1|A|G|1459
6GXP|1|A|U|1460
6GXP|1|A|C|1461

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17