HL_6GXP_040

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

6GXP|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_040 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3201

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6GXP|1|A|U|1629
6GXP|1|A|A|1630
6GXP|1|A|G|1631
6GXP|1|A|A|1632
6GXP|1|A|G|1633
6GXP|1|A|A|1634
6GXP|1|A|A|1635
6GXP|1|A|U|1636
6GXP|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains