HL_6GXP_041

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6GXP|1|A|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_041 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1229

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6GXP|1|A|C|1691
6GXP|1|A|U|1692
6GXP|1|A|U|1693
6GXP|1|A|C|1694
6GXP|1|A|G|1695
6GXP|1|A|G|1696

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA