HL_6GXP_078

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6GXP|1|a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_078 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2531

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXP|1|a|A|320
6GXP|1|a|A|321
6GXP|1|a|C|322
6GXP|1|a|U|323
6GXP|1|a|G|324
6GXP|1|a|A|325
6GXP|1|a|G|326
6GXP|1|a|A|327
6GXP|1|a|C|328
6GXP|1|a|A|329
6GXP|1|a|C|330
6GXP|1|a|G|331
6GXP|1|a|G|332
6GXP|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20