HL_6GXP_104

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

6GXP|1|A|A|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_104 not in the Motif Atlas

Geometric match to HL_8GLP_112

Geometric discrepancy: 0.3422

The information below is about HL_8GLP_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXP|1|A|C|544
6GXP|1|A|U|545
6GXP|1|A|U|546
6GXP|1|A|A|547
6GXP|1|A|G|548
6GXP|1|A|G|549

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13