HL_6GYV_001

3D structure

PDB id

6GYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme (circular permutation form)

Experimental method

X-RAY DIFFRACTION, SOLUTION SCATTERING

Resolution

2.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6GYV|1|A|U|23, 6GYV|1|A|U|24, 6GYV|1|A|G|26

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GYV_001 not in the Motif Atlas

Geometric match to HL_4QOZ_001

Geometric discrepancy: 0.2171

The information below is about HL_4QOZ_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6GYV|1|A|C|22
6GYV|1|A|U|23
6GYV|1|A|U|24
6GYV|1|A|C|25
6GYV|1|A|G|26
6GYV|1|A|G|27

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains