HL_6GYV_005

3D structure

PDB id

6GYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme (circular permutation form)

Experimental method

X-RAY DIFFRACTION, SOLUTION SCATTERING

Resolution

2.5 Å

Loop

Sequence

CUCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GYV_005 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.1917

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GYV|1|A|C|153
6GYV|1|A|U|154
6GYV|1|A|C|155
6GYV|1|A|A|156
6GYV|1|A|G|157

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains