HL_6GZ3_019

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCCUCUCCAGUCCGC

Length

16 nucleotides

Bulged bases

6GZ3|1|A2|U|1421, 6GZ3|1|A2|C|1422, 6GZ3|1|A2|G|1427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_019 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3473

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6GZ3|1|A2|G|1417
6GZ3|1|A2|G|1418
6GZ3|1|A2|C|1419
6GZ3|1|A2|C|1420
6GZ3|1|A2|U|1421
6GZ3|1|A2|C|1422
6GZ3|1|A2|U|1423
6GZ3|1|A2|C|1424
6GZ3|1|A2|C|1425
6GZ3|1|A2|A|1426
6GZ3|1|A2|G|1427
6GZ3|1|A2|U|1428
6GZ3|1|A2|C|1429
6GZ3|1|A2|C|1430
6GZ3|1|A2|G|1431
6GZ3|1|A2|C|1432

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30

Chain AQ

ribosomal protein eL18