HL_6GZ3_029

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGCCAUGGAAGUCGGAAUC

Length

21 nucleotides

Bulged bases

6GZ3|1|A2|U|1961, 6GZ3|1|A2|G|1962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|A2|G|1954
6GZ3|1|A2|U|1955
6GZ3|1|A2|G|1956
6GZ3|1|A2|G|1957
6GZ3|1|A2|C|1958
6GZ3|1|A2|C|1959
6GZ3|1|A2|A|1960
6GZ3|1|A2|U|1961
6GZ3|1|A2|G|1962
6GZ3|1|A2|G|1963
6GZ3|1|A2|A|1964
6GZ3|1|A2|A|1965
6GZ3|1|A2|G|1966
6GZ3|1|A2|U|1967
6GZ3|1|A2|C|1968
6GZ3|1|A2|G|1969
6GZ3|1|A2|G|1970
6GZ3|1|A2|A|1971
6GZ3|1|A2|A|1972
6GZ3|1|A2|U|1973
6GZ3|1|A2|C|1974

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

Ribosomal protein L10 (Predicted)

Chain AK

ribosomal protein uL10

Chain Aq

Ribosomal protein L12

Chain Ct

eukaryotic elongation factor 2 (eEF2)