HL_6GZ3_031

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCCUACGC

Length

9 nucleotides

Bulged bases

6GZ3|1|A2|U|2246, 6GZ3|1|A2|C|2248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_031 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3835

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GZ3|1|A2|G|2066
6GZ3|1|A2|G|2067
6GZ3|1|A2|C|2068
6GZ3|1|A2|C|2245
6GZ3|1|A2|U|2246
6GZ3|1|A2|A|2247
6GZ3|1|A2|C|2248
6GZ3|1|A2|G|2249
6GZ3|1|A2|C|2250

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AQ

ribosomal protein eL18

Chain Ae

ribosomal protein eL32

Chain At

ribosomal protein eL28