HL_6GZ3_063

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

6GZ3|1|A2|U|4316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_063 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2725

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GZ3|1|A2|U|4314
6GZ3|1|A2|U|4315
6GZ3|1|A2|U|4316
6GZ3|1|A2|G|4317
6GZ3|1|A2|G|4318
6GZ3|1|A2|G|4319
6GZ3|1|A2|U|4320
6GZ3|1|A2|U|4321
6GZ3|1|A2|U|4322
6GZ3|1|A2|U|4323
6GZ3|1|A2|A|4324

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

ribosomal protein eL13

Chain Aa

ribosomal protein uL15

Chain Ai

ribosomal protein eL36

Chain Ao

ribosomal protein eL42