HL_6GZ3_072

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6GZ3|1|A2|U|4934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_072 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.195

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6GZ3|1|A2|G|4933
6GZ3|1|A2|U|4934
6GZ3|1|A2|A|4935
6GZ3|1|A2|G|4936
6GZ3|1|A2|A|4937
6GZ3|1|A2|C|4938
6GZ3|1|A2|G|4939
6GZ3|1|A2|A|4940
6GZ3|1|A2|C|4941

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AP

ribosomal protein uL22