HL_6GZ3_111

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_111 not in the Motif Atlas

Geometric match to HL_6CZR_090

Geometric discrepancy: 0.3062

The information below is about HL_6CZR_090

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ3|1|B1|C|1460
6GZ3|1|B1|G|1461
6GZ3|1|B1|U|1462
6GZ3|1|B1|U|1463
6GZ3|1|B1|C|1464
6GZ3|1|B1|A|1465
6GZ3|1|B1|G|1466

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

ribosomal protein uS2

Chain BR

ribosomal protein eS17

Chain Bc

Ribosomal protein S28