HL_6GZ5_005

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCUGAUCG

Length

10 nucleotides

Bulged bases

6GZ5|1|A2|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_005 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.229

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GZ5|1|A2|C|199
6GZ5|1|A2|U|200
6GZ5|1|A2|U|201
6GZ5|1|A2|C|202
6GZ5|1|A2|U|203
6GZ5|1|A2|G|204
6GZ5|1|A2|A|205
6GZ5|1|A2|U|206
6GZ5|1|A2|C|207
6GZ5|1|A2|G|208

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AY

ribosomal protein uL24

Chain Ae

ribosomal protein eL32