HL_6GZ5_019

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCUCUCCAGUCCGC

Length

16 nucleotides

Bulged bases

6GZ5|1|A2|U|1421, 6GZ5|1|A2|C|1422, 6GZ5|1|A2|G|1427, 6GZ5|1|A2|U|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|G|1417
6GZ5|1|A2|G|1418
6GZ5|1|A2|C|1419
6GZ5|1|A2|C|1420
6GZ5|1|A2|U|1421
6GZ5|1|A2|C|1422
6GZ5|1|A2|U|1423
6GZ5|1|A2|C|1424
6GZ5|1|A2|C|1425
6GZ5|1|A2|A|1426
6GZ5|1|A2|G|1427
6GZ5|1|A2|U|1428
6GZ5|1|A2|C|1429
6GZ5|1|A2|C|1430
6GZ5|1|A2|G|1431
6GZ5|1|A2|C|1432

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30

Chain AQ

ribosomal protein eL18