HL_6GZ5_032

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

6GZ5|1|A2|G|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_032 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1594

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ5|1|A2|C|2296
6GZ5|1|A2|G|2297
6GZ5|1|A2|C|2298
6GZ5|1|A2|G|2299
6GZ5|1|A2|G|2300
6GZ5|1|A2|G|2301

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ae

ribosomal protein eL32

Chain At

ribosomal protein eL28