HL_6GZ5_033

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_033 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.2521

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6GZ5|1|A2|A|2355
6GZ5|1|A2|C|2356
6GZ5|1|A2|G|2357
6GZ5|1|A2|A|2358
6GZ5|1|A2|G|2359
6GZ5|1|A2|A|2360
6GZ5|1|A2|A|2361
6GZ5|1|A2|C|2362
6GZ5|1|A2|U|2363

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

ribosomal protein uL22

Chain AR

ribosomal protein eL19

Chain Ad

ribosomal protein eL31