HL_6GZ5_039

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_039 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1224

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ5|1|A2|G|2557
6GZ5|1|A2|G|2558
6GZ5|1|A2|U|2559
6GZ5|1|A2|A|2560
6GZ5|1|A2|A|2561
6GZ5|1|A2|C|2562

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

ribosomal protein eL27

Chain Ag

ribosomal protein eL34