HL_6GZ5_054
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 6GZ5|1|A2|A|3847, 6GZ5|1|A2|A|3848, 6GZ5|1|A2|C|3849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_054 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.1808
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6GZ5|1|A2|G|3844
6GZ5|1|A2|G|3845
6GZ5|1|A2|G|3846
6GZ5|1|A2|A|3847
6GZ5|1|A2|A|3848
6GZ5|1|A2|C|3849
6GZ5|1|A2|G|3850
6GZ5|1|A2|G|3851
6GZ5|1|A2|G|3852
6GZ5|1|A2|C|3853
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AB
- ribosomal protein uL3
- Chain AO
- ribosomal protein uL13
- Chain Ae
- ribosomal protein eL32
- Chain Af
- ribosomal protein eL33
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