HL_6GZ5_057

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6GZ5|1|A2|G|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_057 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1792

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6GZ5|1|A2|C|4155
6GZ5|1|A2|U|4156
6GZ5|1|A2|G|4157
6GZ5|1|A2|G|4158
6GZ5|1|A2|G|4159
6GZ5|1|A2|G|4160
6GZ5|1|A2|C|4161
6GZ5|1|A2|G|4162
6GZ5|1|A2|G|4163

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

ribosomal protein uL16

Chain Ab

ribosomal protein eL29

Chain Bv

Transfer RNA; tRNA