HL_6GZ5_060

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_060 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1411

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6GZ5|1|A2|C|4232
6GZ5|1|A2|A|4233
6GZ5|1|A2|G|4234
6GZ5|1|A2|A|4235
6GZ5|1|A2|A|4236
6GZ5|1|A2|G|4237
6GZ5|1|A2|G|4238
6GZ5|1|A2|G|4239

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

ribosomal protein uL16

Chain AT

ribosomal protein eL21

Chain Bv

Transfer RNA; tRNA