HL_6GZ5_062

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_062 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1904

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ5|1|A2|U|4283
6GZ5|1|A2|G|4284
6GZ5|1|A2|A|4285
6GZ5|1|A2|A|4286
6GZ5|1|A2|A|4287
6GZ5|1|A2|G|4288

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

ribosomal protein uL18

Chain AT

ribosomal protein eL21

Chain Ao

ribosomal protein eL42